PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G071600.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 413aa    MW: 46008.9 Da    PI: 7.9534
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G071600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.95.1e-33451912128
                   NAM   2 ppGfrFhPtdeelvveyLkkkvegkk...lelee....vikevd.....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra. 77 
                           p+G++F+P+d+el+ e+L+  v++     +        +i+++d     i++++P++Lp  v+ +  + +fF++ +k+y++g+rk+r+ 
  Sobic.009G071600.2.p  45 PAGVKFDPSDQELI-EHLESMVKEGGsraH---PligdFIHTIDqgndgICYTHPENLP-GVTRNGVSKHFFHRPSKAYTSGTRKRRKi 128
                           89************.99*****99995552...2333345555445566**********.444556688******************87 PP

                   NAM  78 ...........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                      + ++ W++tgk+++vl+ +g+++g kktLv+y   g+++k+ekt+Wvmh+y+l
  Sobic.009G071600.2.p 129 kserglrscddVGEACWHKTGKTRPVLV-GGQQKGWKKTLVLYnsYGKQRKPEKTNWVMHQYHL 191
                           899999988888899*************.9*************6658999999*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-3638208IPR003441NAC domain
PROSITE profilePS5100531.11944208IPR003441NAC domain
PfamPF023651.7E-1545191IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MCSSNSTSDL TDEKLKDQQR STPASRRCPS CDHELDCNPD MVGFPAGVKF DPSDQELIEH  60
LESMVKEGGS RAHPLIGDFI HTIDQGNDGI CYTHPENLPG VTRNGVSKHF FHRPSKAYTS  120
GTRKRRKIKS ERGLRSCDDV GEACWHKTGK TRPVLVGGQQ KGWKKTLVLY NSYGKQRKPE  180
KTNWVMHQYH LGREEKDGEL VVSKVFYQQK QLRPTATMMG QNDERVEVTS EAMKDMLPGC  240
GAAAAEAGDA MIQLQQHLQQ RQADGQSRFT SARMSREVGV GNPLVGDQGL LHETHHIPSQ  300
HNEVRSMLVK PVHTMPSVES TPLEHRIDQI IACSAISLSP PEQRSENQED RQQQKKVDCR  360
RPCSSEEAMI ACQTSSTEEI CKLVGLLLLC RMCRKSFNSS QGDKTALSTP TS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440751.11e-167hypothetical protein SORBIDRAFT_09g006018, partial
TrEMBLC5YUC91e-167C5YUC9_SORBI; Putative uncharacterized protein Sb09g006018 (Fragment)
STRINGSb09g006018.11e-167(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145338117
Representative plantOGRP5251585
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.19e-89NAC domain containing protein 75